package pdb
| BackboneHB | Container for hydrogen bond energy between two residues. This only consider hydrogen bonds between backbone N-H and C=O. |
| HBParams | Container for static variables for backbone hydrogen bond. Some of them come from STRIDE |
| MyLine | |
| Pdb | data container for pdb file |
| PdbAtom | Container for ATOM or HETATM entry of pdb file. |
| PdbChain | Container of a chain in pdb file |
| PdbGridParams | Static data container used in generating grid. |
| PdbModel | Container for a MODEL in pdb file. If there are no MODELs in pdb file, at least one MODEL exists and is used in this program. |
| PdbResidue | Container of a residue in pdb file. Non-amino acid molecules such as waters, co-factors, lipids are considered as residues. |
| PdbSecondary | Secondary structure information written in pdb files.
Available secondary structure names are listed in |
| RamaAngle | Torsion angle |
| RamaAngles | Container for phi and psi angles |
| RamaParam | |
| RamaParams | Pramaeters related with Ramachandran plot |
| ResidueBase | base class for PDB residue (amino acids, water, lipids, ions, ...) |
| SecondaryType | Static data container defining secondary structure type. |
| WMHydrogenBond |